[ DevCourseWeb.com ] Udemy - Learn Docking & Molecular Dynamics Simulation From Scratch

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[ DevCourseWeb.com ] Udemy - Learn Docking & Molecular Dynamics Simulation From Scratch

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种子哈希：08e64beb73e62b63fbe45cdd9a25ab6ab6276b72
文件大小： 3.88G
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收录时间：2022-04-03
最近下载：2025-05-17

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文件列表

  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 Practical-4_ How to Predict 3D Structure Using Modeller (Homology).mp4 280.7 MB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/006 Practical-3_ Fixing Missing Residues Issue With Modeller.mp4 156.1 MB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/009 Practical-5_ How to Use I-TASSER for Prediction of 3D Structure_.mp4 155.7 MB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/003 Practical-1_ How To Download Protein Structure From Protein Databank.mp4 142.0 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/014 Practical-28 Downloading and Preparation of Protein 3D Structure for Docking.mp4 108.3 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/024 Practical-35 (Part-A) Performing Docking Using AutoDock4.mp4 102.8 MB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/004 Practical-2_ Visualization of 3D Structure of Protein Using Pymol.mp4 95.2 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/017 Practical-30 Drawing of Ligand Structure in ChemSketch.mp4 89.8 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/027 Practical-34 Analyzing the Docking Data.mp4 87.4 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/028 Practical-35_ PatchDock; Shape Complementary Docking Program.mp4 83.9 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/020 Practical-33 Setting Grid.mp4 79.8 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/016 Practical-29 Downloading of Ligand 3D Structure from ZINC Database.mp4 76.8 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/018 Practical-31 Preparation of Ligand Molecule for Docking.mp4 68.1 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/009 Practical-40_ Making Complex.mp4 65.5 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/001 Practical-7 Installation of Linux in Windows Environment.mp4 64.0 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/015 Practical-44_ Analysis.mp4 62.6 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/002 Practical-8 Installation of GROMACS.mp4 62.4 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/022 Practical-34 (Part-A) Performing Docking with Vina.mp4 61.3 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/026 Practical-33 Preforming Docking with CB Dock.mp4 60.3 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/008 Practical-39_ Preparation of Ligand Topology File.mp4 54.9 MB
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/008 Practical-49_ Preparation of Ligands for Docking.mp4 53.8 MB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/001 What is Protein_.mp4 53.8 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/012 Practical-15 Equilibration Phase-I (Part-A).mp4 52.8 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/010 Practical-13 Ionization Step in Molecular Dynamics Simulation.mp4 52.5 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/008 Practical-11 Creation of Topology File In GROMACS.mp4 51.8 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/011 Practical-14 Energy Minimization (EM) in GROMACS.mp4 50.9 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/009 Practical-12 Solvation of Step in Molecular Dynamics Simulation.mp4 49.9 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/025 Practical-35 (Part-B) Visualization of AutoDock4 Docking Results.mp4 49.2 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/026 Practical-25 Opening of XVG Files in Excel.mp4 48.5 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/011 Practical-42_ Ligand Restrain.mp4 48.3 MB
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/007 Practical-48_ Downloading of Thousands of Ligands in One Click.mp4 45.2 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/010 Practical-41_ Solvation, Ionization & Energy Minimization of Complex.mp4 42.1 MB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/010 Practical-6_ Introduction of Alpha-Fold Database and Alpha-Fold Colab.mp4 41.5 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/017 Practical-19 Running Molecular Dynamics Simulation Final Phase.mp4 41.0 MB
  • ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/008 Protein Structure Preparation for Molecular Dynamics Simulations.mp4 40.9 MB
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/010 Practical-51_ Docking of Ligands with Receptors in Vina.mp4 40.6 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/019 Practical-32 Prediction of Active Site of Protein.mp4 40.6 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/007 Practical-38_ Preparation of Protein Topology File.mp4 40.0 MB
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/005 Practical-46_ Installation of Open Babel and Auto-Dock Vina In Linux (Ubuntu).mp4 39.8 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/027 Practical-25.1_ Visualization of MD Trajectory in Pymol.mp4 38.3 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/015 Practical-18 Equilibration Phase-II (Part-B).mp4 36.9 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/010 Theory of Docking Steps-Part-1.mp4 34.1 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/013 Practical-27_ Installation of Ligand Drawing Tools.mp4 33.1 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/013 Practical-44_ Equilibration.mp4 32.7 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/021 Practical-20 Calculation of RMSD.mp4 32.6 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/012 Practical-26 Installation of MGL Tools, Vina, AutoDock4 & Autogrid.mp4 31.5 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/004 Practical-36_ Very First Step; Preparation of Protein and Ligand.mp4 31.4 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/018 Basic Theory of Molecular Dynamics Simulation Data Analysis.mp4 30.8 MB
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/006 Practical-47_ Preparation of Protein Receptor for Virtual Screening.mp4 30.8 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/023 Practical-34 (Part-B) Visualization of Vina Docking Data.mp4 29.7 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/005 Practical-9 Creating Folder in Ubuntu For Molecular Dynamics Simulations.mp4 29.4 MB
  • ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/004 Some Basic Commands for Linux Operating System.mp4 28.1 MB
  • ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/005 Basic Theory of Molecular Dynamics Simulation (Part-4).mp4 27.7 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/024 Practical-23 Calculation of Total Number of Hydrogen bonds (Hb).mp4 27.0 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/022 Practical-21 Calculation of RMSF.mp4 26.8 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/014 Practical-17 Equilibration Phase-II (Part-A).mp4 26.3 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/013 Practical-16 Equilibration Phase-I (Part-B).mp4 24.8 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/011 Theory of Docking Steps-Part-2.mp4 24.7 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/006 Sampling Algorithms-Part-4.mp4 24.5 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/023 Practical-22 Calculation of Radius of Gyration (Rg).mp4 24.5 MB
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/001 Importance of Virtual Screening.mp4 24.4 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/025 Practical-24 Calculation of Solvent Accessible Surface Area (SASA).mp4 24.3 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/014 Practical-44_ Production Phase.mp4 23.0 MB
  • ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/002 Basic Theory of Molecular Dynamics Simulation (Part-1).mp4 22.7 MB
  • ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/003 Basic Theory of Molecular Dynamics Simulation (Part-2).mp4 21.8 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/016 Understanding md.mdp File Before Final Phase.mp4 21.2 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/001 Biggest Drawback of Conventional Docking Protocol.mp4 21.1 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/020 Bringing the Protein in Center Before Data Analysis.mp4 21.0 MB
  • ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/010 Solvation and Ionization of System.mp4 21.0 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/012 Practical-43_ Thermostats.mp4 20.5 MB
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/011 Practical-52_ Analysis.mp4 19.7 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/007 Practical-10 Cleaning Protein Structure For Molecular Dynamics Simulations.mp4 19.3 MB
  • ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/009 Preparation of Topology File for Molecular Dynamics Simulations.mp4 19.0 MB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/002 Experimental Techniques to Determine 3D Structure of Protein.mp4 18.8 MB
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/009 Practical-50_ Setting Grid and Writing of Configuration File.mp4 18.6 MB
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/002 Introduction to Virtual Screening.mp4 17.8 MB
  • ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/012 Equilibration and Production Phase of Molecular Dynamics Simulation.mp4 17.6 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/015 Issue With Protein Structure Preparation in MGL Tools.mp4 17.4 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/005 Sampling Algorithms-Part-3.mp4 17.2 MB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/005 Fixing the Missing Residues in Protein 3D Structure Downloaded.mp4 16.8 MB
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/003 Fundamental Steps of Virtual Screening.mp4 16.6 MB
  • ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/004 Basic Theory of Molecular Dynamics Simulation (Part-3).mp4 16.6 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/021 Very Important Step; Be Careful Here.mp4 16.6 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/004 Work Flow of Molecular Dynamics in GROMACS.mp4 15.8 MB
  • ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/001 Basic Introduction of Molecular Dynamic Simulations and its Steps.mp4 15.6 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/007 Scoring Algorithms.mp4 15.6 MB
  • ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/002 Features of Linux Operating System.mp4 15.1 MB
  • ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/001 Basic Type of Operating System Available in Market.mp4 14.7 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/005 Practical-37_ Necessary Files Needed For Molecular Dynamics Simulations.mp4 14.0 MB
  • ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/005 What's Next_.mp4 12.2 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/001 Introduction of Docking-Part-1.mp4 11.5 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/002 Introduction of Docking-Part-2.mp4 10.7 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/003 Modules of GROMACS Used in Molecular Dynamics Tutorial.mp4 10.1 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/006 Commands to Run Molecular Dynamics Simulations (For You).mp4 9.8 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/006 Commands to Run Ligand-Protein Molecular Dynamics Simulations.mp4 8.8 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/003 Basic Steps of Protein-Ligand MD Simulations.mp4 8.6 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/009 Basic Steps in Docking Protocol.mp4 8.4 MB
  • ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/006 MD (Molecular Dynamics Simulation) Cycle.mp4 8.3 MB
  • ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/011 Energy Minimization (EM) of System.mp4 8.1 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/019 Commands for Analysis of Molecular Dynamics Simulation Data.mp4 7.9 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/008 Types of Docking.mp4 7.3 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/003 Sampling Algorithms-Part-1.mp4 6.1 MB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/007 Intro to Protein 3D Structure Prediction.mp4 5.7 MB
  • ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/003 Terminal of Linux Operating System.mp4 5.6 MB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37727938-pdb-95.pir 5.1 MB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/004 Sampling Algorithms-Part-2.mp4 4.9 MB
  • ~Get Your Files Here !/01 - Important Massage Before Start of The Course/001 Important Massage from Instructors.mp4 4.5 MB
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/004 Commands Needed to Run Virtual Screening.mp4 4.3 MB
  • ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/007 Basic Steps of Molecular Dynamics Simulations.mp4 4.1 MB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/002 Difference Between Simple MD Simulation Vs Protein-Ligand MD Simulations.mp4 3.0 MB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/37706258-Commands-to-Install-GROMACS-Using-Linux-Terminal.pdf 94.1 kB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/37706644-Commands-to-run-MD-simulation-of-Protein-in-Water.pdf 89.7 kB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/37708482-Commands-for-MD-Ligand-Protein-Complex.pdf 84.0 kB
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/37713454-Commands-to-Run-Vina-for-Virtual-Screening-in-Linux-Environment.pdf 71.5 kB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/37707724-Commands-to-Analyze-the-MD-Data.pdf 68.5 kB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/37708606-Commands-to-Analyze-the-Molecular-Dynamics-Simulation-Data-of-Ligand-Protein-Complex.pdf 65.9 kB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/37390682-cgenff-charmm2gmx.py 37.8 kB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/008 Practical-4_ How to Predict 3D Structure Using Modeller (Homology)_en.vtt 31.5 kB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/006 Practical-3_ Fixing Missing Residues Issue With Modeller_en.vtt 19.5 kB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/003 Practical-1_ How To Download Protein Structure From Protein Databank_en.vtt 15.8 kB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/009 Practical-5_ How to Use I-TASSER for Prediction of 3D Structure__en.vtt 13.5 kB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/017 Practical-30 Drawing of Ligand Structure in ChemSketch_en.vtt 13.3 kB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/014 Practical-28 Downloading and Preparation of Protein 3D Structure for Docking_en.vtt 12.8 kB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/027 Practical-34 Analyzing the Docking Data_en.vtt 11.6 kB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/024 Practical-35 (Part-A) Performing Docking Using AutoDock4_en.vtt 11.1 kB
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/008 Practical-49_ Preparation of Ligands for Docking_en.vtt 10.5 kB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/022 Practical-34 (Part-A) Performing Docking with Vina_en.vtt 9.6 kB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/028 Practical-35_ PatchDock; Shape Complementary Docking Program_en.vtt 9.4 kB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/018 Practical-31 Preparation of Ligand Molecule for Docking_en.vtt 9.4 kB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/016 Practical-29 Downloading of Ligand 3D Structure from ZINC Database_en.vtt 8.5 kB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/026 Practical-33 Preforming Docking with CB Dock_en.vtt 8.3 kB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/015 Practical-44_ Analysis_en.vtt 8.2 kB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/004 Practical-2_ Visualization of 3D Structure of Protein Using Pymol_en.vtt 8.2 kB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/020 Practical-33 Setting Grid_en.vtt 7.8 kB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/009 Practical-40_ Making Complex_en.vtt 7.7 kB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/010 Practical-13 Ionization Step in Molecular Dynamics Simulation_en.vtt 7.5 kB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/018 Basic Theory of Molecular Dynamics Simulation Data Analysis_en.vtt 7.4 kB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/008 Practical-39_ Preparation of Ligand Topology File_en.vtt 7.2 kB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/001 What is Protein__en.vtt 7.1 kB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/012 Practical-15 Equilibration Phase-I (Part-A)_en.vtt 6.8 kB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/011 Practical-42_ Ligand Restrain_en.vtt 6.7 kB
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/010 Practical-6_ Introduction of Alpha-Fold Database and Alpha-Fold Colab_en.vtt 6.7 kB
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/007 Practical-48_ Downloading of Thousands of Ligands in One Click_en.vtt 6.6 kB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/026 Practical-25 Opening of XVG Files in Excel_en.vtt 6.3 kB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/008 Practical-11 Creation of Topology File In GROMACS_en.vtt 6.3 kB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/025 Practical-35 (Part-B) Visualization of AutoDock4 Docking Results_en.vtt 6.2 kB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/011 Practical-14 Energy Minimization (EM) in GROMACS_en.vtt 6.2 kB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/002 Practical-8 Installation of GROMACS_en.vtt 6.0 kB
  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/009 Practical-12 Solvation of Step in Molecular Dynamics Simulation_en.vtt 5.8 kB
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/012 Practical-26 Installation of MGL Tools, Vina, AutoDock4 & Autogrid_en.vtt 5.7 kB
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  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/005 Practical-46_ Installation of Open Babel and Auto-Dock Vina In Linux (Ubuntu)_en.vtt 5.0 kB
  • ~Get Your Files Here !/07 - Module-6_ Molecular Dynamics Simulations of Protein-Ligand Docked Complex/013 Practical-44_ Equilibration_en.vtt 4.9 kB
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  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37727946-script1.py 1.3 kB
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  • ~Get Your Files Here !/05 - Module 4_ Demonstration of MD Simulation of Protein in Water with GROMACS/37706684-ions.mdp 1.1 kB
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  • ~Get Your Files Here !/04 - Module 3_ Computer Operating System Used for Molecular Dynamics Simulation/003 Terminal of Linux Operating System_en.vtt 1.0 kB
  • ~Get Your Files Here !/01 - Important Massage Before Start of The Course/001 Important Massage from Instructors_en.vtt 908 Bytes
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  • ~Get Your Files Here !/03 - Module-2_ Theory of Molecular Dynamics Simulations/007 Basic Steps of Molecular Dynamics Simulations_en.vtt 780 Bytes
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37081170-script3.py 553 Bytes
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37727980-script5.py 527 Bytes
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37727956-script2.py 469 Bytes
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37081164-script2.py 464 Bytes
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37727974-script4.py 410 Bytes
  • ~Get Your Files Here !/08 - Module-7_ Virtual Screening of Drugs/37709016-Vina-linux.pl 409 Bytes
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37727968-script3.py 383 Bytes
  • ~Get Your Files Here !/Bonus Resources.txt 357 Bytes
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37727940-qseq1.ali 263 Bytes
  • ~Get Your Files Here !/02 - (Optional) Module-1 Protein Structure Basics & Way to Get Them/37081162-script1.py 240 Bytes
  • Get Bonus Downloads Here.url 182 Bytes
  • ~Get Your Files Here !/06 - Module-5_ Fundamentals of Molecular Docking (Theory & Practical)/37707734-conf.txt 182 Bytes
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